專任-系統生物與生物資訊組   首頁 師資介紹 專任-系統生物與生物資訊組
張彙音 助理教授 Hui-Yin Chang
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學經歷

學經歷

學歷:

國立陽明大學生物醫學資訊研究所 博士

國立成功大學 醫學資訊研究所 碩士

中山醫學大學 資訊管理學系 學士


經歷:

台灣中央研究院 博士後研究員

美國密西根大學 博士後研究員


論文著作區


期刊論文:

1. da Veiga Leprevost, F., Haynes, S. E., Avtonomov, D. M., Chang, H. Y. Shanmugam, A. K., Mellacheruvu, D., Kong, A. T., Nesvizhskii, A. I. (2020, Jul). Philosopher: a versatile toolkit for shotgun proteomics data analysis. Nature Methods, 17(9): 869-870. [SCI; IF=30.822]


2. Chang, H. Y., Kong, A. T., da Veiga Leprevost, F., Avtonomov, D. M., Haynes, S.E. and Nesvizhskii, A. I. (2020, Apr). Crystal-C: A computational tool for refinement of open search results. Journal of Proteome Research, 19(6): 2511-15. [本人為第一作者; SCI; IF=4.074]


3. Djomehri, S. I., Gonzalez, M. E., da Veiga Leprevost, F., Tekula, S. R., Chang, H. Y., White, M. J., Cimino-Mathews, A., Burman, B., Basrur, V., Argani, P., Nesvizhskii, A. I., Kleer, C. G. (2020, Apr). Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors. Nature Communications, 11(1): 1723. [SCI; IF=12.121]


4. Dou, Y., E. A. Kawaler, D. Cui Zhou, M. A. Gritsenko, C. Huang, L. Blumenberg, A. Karpova, V. A. Petyuk, S. R. Savage, S. Satpathy, W. Liu, Y. Wu,C. F. Tsai, B. Wen, Z. Li, S. Cao, J. Moon, Z. Shi, M. Cornwell, M. A. Wyczalkowski, R. K. Chu, S. Vasaikar, H. Zhou, Q. Gao, R. J. Moore, K. Li, S. Sethuraman, M. E. Monroe, R. Zhao, D. Heiman, K. Krug, K. Clauser, R. Kothadia, Y. Maruvka, A. R. Pico, A. E. Oliphant, E. L. Hoskins, S. L. Pugh, S. J. I. Beecroft, D. W. Adams, J. C. Jarman, A. Kong, H. Y. Chang, B. Reva, Y. Liao, D. Rykunov, A. Colaprico, X. S. Chen, A. Czekanski, M. Jedryka, R. Matkowski, M. Wiznerowicz, T. Hiltke, E. Boja, C. R. Kinsinger, M. Mesri, A. I.Robles, H. Rodriguez, D. Mutch, K. Fuh, M. J. Ellis, D. DeLair, M. Thiagarajan, D. R. Mani, G. Getz, M. Noble, A. I. Nesvizhskii, P. Wang, M. L. Anderson, D. A. Levine, R. D. Smith, S. H. Payne, K. V. Ruggles, K. D. Rodland, L. Ding, B. Zhang, T. Liu, D. Fenyo (2020, Feb). Proteogenomic Characterization of Endometrial Carcinoma. Cell, 180(4): 729-748 e726. [SCI; IF=38.637]


5. Clark, D. J., S. M. Dhanasekaran, F. Petralia, J. Pan, X. Song, Y. Hu, F. da VeigaLeprevost, B. Reva, T. M. Lih, H. Y. Chang, W. Ma, C. Huang, C. J. Ricketts, L. Chen, A. Krek, Y. Li, D. Rykunov, Q. K. Li, L. S. Chen, U. Ozbek, S. Vasaikar, Y. Wu, S. Yoo, S. Chowdhury, M. A. Wyczalkowski, J. Ji, M. Schnaubelt, A. Kong, S. Sethuraman, D. M. Avtonomov, M. Ao, A. Colaprico, S. Cao, K. C. Cho, S. Kalayci, S. Ma, W. Liu, K. Ruggles, A. Calinawan, Z. H. Gumus, D. Geizler, E. Kawaler, G. C. Teo, B. Wen, Y. Zhang, S. Keegan, K. Li, F. Chen, N. Edwards, P. M. Pierorazio, X. S. Chen, C. P. Pavlovich, A. A. Hakimi, G. Brominski, J. J. Hsieh, A. Antczak, T. Omelchenko, J. Lubinski, M. Wiznerowicz, W. M. Linehan, C. R. Kinsinger, M. Thiagarajan, E. S. Boja, M. Mesri, T. Hiltke, A. I. Robles, H. Rodriguez, J. Qian, D. Fenyo, B. Zhang, L. Ding, E. Schadt, A. M. Chinnaiyan, Z. Zhang, G. S. Omenn, M. Cieslik, D. W. Chan, A. I. Nesvizhskii, P. Wang, H. Zhang, et al. (2020, Jan). Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma. Cell, 179(4): 964-983 e931. [SCI; IF=38.637]


6. H. Y. Chang, C. T. Chen, C. L. Ko, Y. J. Chen, Y. J. Chen, W. L. Hsu, C. G. Juo, and T. Y. Sung (2017, Dec). iTop-Q: an Intelligent Tool for Top-down Proteomics Quantitation Using DYAMOND Algorithm. Analytical Chemistry, 89(24): 13128-13136. [本人為第一作者; SCI; IF=6.042]


7. Lih, T. M., W. K. Choong, C. C. Chen, C. W. Cheng, H. N. Lin, C. T. Chen, H. Y.Chang, W. L. Hsu, and T. Y. Sung (2016, Jul). MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification. Nucleic Acids Research, 44(W1): W575-580. [SCI; IF=10.162]


8. H. Y. Chang, C. T. Chen, T. M. Lih, K. S. Lynn, C. G. Juo, W. L. Hsu, and T. Y. Sung (2016, Jan). iMet-Q: A User-Friendly Tool for Label-Free Metabolomics Quantitation Using Dynamic Peak-Width Determination. PLoS One, 11(1): e0146112. [本人為第一作者; SCI; IF=2.806]

9. Choong, W. K., H. Y. Chang, C. T. Chen, C. F. Tsai, W. L. Hsu, Y. J. Chen, and T.Y. Sung (2015, Dec). Informatics View on the Challenges of Identifying Missing Proteins from Shotgun Proteomics. Journal of Proteome Research, 14(12): 5396-5407. [SCI; IF=4.268]


10.Lynn, K. S., M. L. Cheng, Y. R. Chen, C. Hsu, A. Chen, T. M. Lih, H. Y. Chang, C. J. Huang, M. S. Shiao, W. H. Pan, T. Y. Sung, and W. L. Hsu (2015, Feb). Metabolite identification for mass spectrometry-based metabolomics using multiple types of correlated ion information. Analytical Chemistry, 87(4): 2143-2151. [SCI; IF=5.886]



研討會論文:

1. Hui-Yin Chang, Felipe da Veiga Leprevost, Wei-ping Ma, Pei Wang, Bo Wen, Bing Zhang, Alexey I. Nesvizhskii (2020, Jun). TMT-Integrator: An efficient analysis and multi-level report generation for labeling-based proteomics experiments. 68th ASMS Conference on Mass Spectrometry and Allied Topics. [本人為第一作者]


2. Hui-Yin Chang, Andy T. Kong, Felipe V. Leprevost, Fengchao Yu, Guo Ci Teo, Dmitry M. Avtonomov, Venkatesha Basrur, Alexey I. Nesvizhskii (2019, Jun). Implementation of MSFragger and Philosopher (PeptideProphet) as Proteome Discoverer Nodes. 67th ASMS Conference on Mass Spectrometry and Allied Topics. [本人為第一作者]


3. Hui-Yin Chang, Andy T. Kong, Felipe V. Leprevost, Dmitry M. Avtonomov, Alexey I. Nesvizhskii (2018, Jun). Crystal-C: A computational tool for refinement of open search results. 66th ASMS Conference on Mass Spectrometryand Allied Topics. [本人為第一作者]


4. Hui-Yin Chang, Ching-Tai Chen, Chiun-Gung Juo, Wen-Lian Hsu, Ting-Yi Sung(2016, Sep). iTop-Q: an intelligent top-down proteomics quantification tool using the DYAMOND algorithm for charge state deconvolution. HUPO 15th Annual World Congress. [本人為第一作者]


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